HilMer
HilMer is a lightweight, open-source tool designed for efficient sequence alignment and motif discovery in biological data. Developed primarily for bioinformatics applications, it is particularly useful for analyzing DNA, RNA, and protein sequences. The software is built on the principles of suffix arrays and suffix trees, which allow for fast and memory-efficient string matching and pattern discovery.
One of the key features of HilMer is its ability to perform de novo assembly of short
The software is distributed under an open-source license, allowing for free use, modification, and distribution. It
While HilMer is highly efficient for many tasks, it may not support all advanced features found in