phyDat
phyDat is an R package designed for the manipulation and analysis of phylogenetic data. It provides a flexible framework for working with various types of phylogenetic information, including DNA sequences, protein sequences, and discrete character data. The package's core data structure, the `phyDat` object, is optimized for efficient storage and manipulation of these data types.
Key functionalities of phyDat include reading and writing phylogenetic data from common file formats such as
phyDat is often used in conjunction with other phylogenetic software and packages in R, contributing to a