phatBayes
phatBayes is a Bayesian framework for phylogenetic inference. It is designed to provide a flexible and robust approach to estimating evolutionary relationships between species. The core of phatBayes is its ability to incorporate complex models of molecular evolution, allowing for more accurate phylogenetic reconstructions. It offers a probabilistic framework for analyzing sequence data, where uncertainty in the evolutionary tree and model parameters is explicitly quantified.
The software implements Markov Chain Monte Carlo (MCMC) methods to explore the posterior distribution of phylogenetic
Key features of phatBayes include its extensibility, allowing for the integration of new models and analytical