CHORegress
CHORegress is a software tool designed for the analysis of ChIP-seq (Chromatin Immunoprecipitation sequencing) data. It is particularly useful for identifying regulatory elements and understanding the mechanisms of gene regulation. CHORegress employs a regression-based approach to model the relationship between DNA sequence features and ChIP-seq read counts, allowing for the identification of sequence motifs that are enriched in regions of interest.
The tool is developed to handle large-scale ChIP-seq datasets, making it suitable for both small-scale and large-scale
One of the key features of CHORegress is its ability to incorporate prior knowledge about the regulatory
CHORegress is implemented in the R programming language and is available as an open-source package. It provides
In summary, CHORegress is a powerful tool for the analysis of ChIP-seq data, offering a regression-based approach