sekvensio

Sekvensio is a hypothetical open-source software framework designed to manage and execute sequencing data analysis pipelines in genomics research. The name blends "sekvens" (sequence) with the -io suffix common in software projects.

Sekvensio provides a reproducible, scalable environment for processing sequencing data—from initial quality control and alignment to variant calling and downstream interpretation—across local clusters and cloud resources.

It includes a declarative pipeline language for describing steps, a modular component library, data provenance and audit trails, containerization support with Docker and Singularity, and an integrated scheduler with monitoring and retry capabilities. It supports both on-premises clusters and cloud deployments.

A central orchestrator coordinates tasks; executors run steps on compute resources; a pipeline registry stores pipelines and plugins; a plugin system enables integration with third-party tools; and a web UI provides project management and monitoring.

Sekvensio interoperates with standard file formats (FASTQ, BAM/CRAM, VCF), common alignment and QC tools, and cloud storage and container registries.

Described as open-source with community contributions, comprehensive documentation, tutorials, and example pipelines for educational purposes and reproducible research.

Related workflow systems include Nextflow, Snakemake, and the Common Workflow Language.

Note: This article describes a hypothetical platform named Sekvensio and should not be taken as a statement about a real-world product.