meqmL

meqmL is a domain-specific language designed for specifying and analyzing mass spectrometry experiments. It aims to provide a standardized and unambiguous way to describe experimental workflows, parameters, and data processing steps. The language is intended to facilitate reproducibility, data sharing, and automated analysis within the field of mass spectrometry.

The design of meqmL focuses on capturing the essential components of a mass spectrometry experiment, including sample preparation, instrument settings, acquisition methods, and subsequent data analysis pipelines. It allows researchers to define a sequence of operations, specify the values of various parameters, and link different stages of the experiment together. This structured approach helps to reduce errors and misinterpretations that can arise from manual descriptions or disparate data formats.

meqmL is typically parsed and interpreted by software tools that can then execute the described experiments, simulate them, or generate standardized reports. Its adoption can lead to improved collaboration among researchers, easier integration of different analytical platforms, and a more robust foundation for computational mass spectrometry. The language is under active development, with ongoing efforts to expand its capabilities and integrate it with existing mass spectrometry software and databases.