polyprolinecontaining

Polyprolinecontaining refers to molecules or structures that incorporate proline-rich sequences. Proline is a unique amino acid due to its cyclic side chain, which introduces rigidity into peptide backbones. When multiple proline residues are present in a sequence, they can adopt specific helical conformations, most notably the polyproline helix. This helix is distinct from the alpha-helix and beta-sheet and is characterized by its tightly packed helical structure stabilized by inter-residue van der Waals forces.

The polyproline helix can exist in two main forms: the PPII helix (trans isomer) and the PPI helix (cis isomer). The PPII helix is more common and generally more stable, characterized by a left-handed helical structure with approximately three residues per turn. The PPI helix, while less common, also adopts a helical structure. The presence of proline residues in a polypeptide chain can significantly influence protein folding, stability, and interactions.

Polyproline-rich sequences are found in various biological contexts. They are important structural motifs in proteins involved in cell signaling, extracellular matrix components, and protein-protein interactions. For instance, proline-rich domains are recognized by specific protein domains like SH3 (Src homology 3) and WW domains, playing a crucial role in assembling signaling complexes. The unique structural properties conferred by proline-rich segments are therefore essential for the function of many biomolecules.