haploview
Haploview is a software package used for analyzing genetic association data. It was developed by the Broad Institute and is freely available for academic and non-profit use. The primary function of Haploview is to visualize and analyze haplotype blocks, identify tag SNPs, and perform basic association tests.
The software reads standard genetic association data formats, such as PLINK and VCF. It then allows users
A key feature of Haploview is its ability to identify tag SNPs. Tag SNPs are a subset
Furthermore, Haploview can perform simple association tests, such as chi-squared tests and Fisher's exact tests, to