methylKit
MethylKit is an R package designed for the analysis of DNA methylation data. It provides tools for the processing, quality control, and visualization of bisulfite sequencing data. The package is particularly useful for researchers studying epigenetic modifications and their role in various biological processes.
MethylKit offers a range of functions for data preprocessing, including filtering low-quality reads, normalizing methylation levels,
One of the key features of MethylKit is its support for various data formats, including Bismark, BED,
MethylKit is open-source and available on Bioconductor, a repository of R packages for bioinformatics. It is